Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs11638458 | chr15:65747573 | T/C | 0.000219 | 480 | 15.15 | 15.98 | 17.48 | KM Plot |
| THCA | rs11638752 | chr15:89041810 | C/T | 2.0E-15 | 490 | 16.48 | 15.17 | 9.77 | KM Plot |
| THCA | rs11640627 | chr16:50137901 | G/A | 0.000177 | 484 | 14.83 | 16.62 | 15.67 | KM Plot |
| THCA | rs11641265 | chr16:20783278 | A/G | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs11641333 | chr16:20744154 | T/C | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs11642081 | chr16:20790315 | T/C | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs11642478 | chr16:20759548 | C/T | 4.81E-5 | 490 | 16.38 | 14.63 | 17.47 | KM Plot |
| THCA | rs11642579 | chr16:50132080 | C/G | 0.000257 | 490 | 13.6 | 16.37 | 15.67 | KM Plot |
| THCA | rs11642585 | chr16:20784016 | A/C | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs116427547 | chr19:43579023 | G/A | 0.000256 | 485 | 15.32 | 18.3 | 10.08 | KM Plot |
| THCA | rs11643290 | chr16:20772409 | C/T | 3.38E-5 | 490 | 16.37 | 14.63 | 17.65 | KM Plot |
| THCA | rs11643502 | chr16:20712538 | G/A | 4.12E-5 | 486 | 16.38 | 14.5 | 17.65 | KM Plot |
| THCA | rs11643620 | chr16:20729699 | G/A | 3.4E-5 | 489 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs11643793 | chr16:20700016 | G/A | 4.15E-5 | 486 | 16.38 | 14.5 | 17.65 | KM Plot |
| THCA | rs11643819 | chr16:20700317 | A/G | 4.15E-5 | 486 | 16.38 | 14.5 | 17.65 | KM Plot |